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DNA double-strand breaks regulate the cleavage-independent release of Rec8-co...
The mitotic cohesin complex necessary for sister chromatid cohesion and chromatin loop formation shows local and global association to chromosomes in response to DNA... -
Characterization of H3 density, H3 or H4 acetylation, Rpd3 binding, TFIIB bin...
Binding profiles for H3 and H4ac were determined as cells transition from log growth to quiescence. We found that massive chromatin changes that reflect global transcriptional... -
Swc4 protects chromatin against genome instability and aneuploidy
In the baker’s yeast Saccharomyces cerevisiae, Swc4, Yaf9, Arp4, and Act1 form a submodule shared by histone acetylation NuA4 complex and chromatin remodeling SWR1 complex... -
Analysis of the role of yeast eIF4E-binding protein Caf20p in translation con...
Caf20p is one of two Saccharomyces cerevisiae eIF4E binding proteins (4E-BPs) involved in translational control. Both 4E-BPs inhibit translation of a different subset of mRNAs,... -
Saccharomyces cerevisiae yHRWh51 3-hybrid Resequencing
Genome sequencing of 3-species Saccharomyces hybrid strain -
Bre1-mediated Set2 protein degradation promotes chronological aging in buddin...
Histone modification affects life span in various organisms. The loss of Histone H3K36 methylation can shorten replicative life span in Saccharomyces cerevisiae. However,... -
CAGE experiment of S. Cerevisiae strain CEN.PK113-7D in four different chemos...
The CAGE experiment was performed in four different chemostat conditions to assess if and how much the Transcription start site landscape changes in the industrial relevant S.... -
Chip histone H3pT11 in glc7-ts in yeast cells
Genome-wide detection of histone H3pT11 binding in BY4741 and glc7-ts cells,and binding to telomere genes and autophagy genes -
ChIP-exo data for 21 transcription factors of yeast metabolic gene regulation...
Conditions: Nitrogen-, ethanol-, anaerobic glucose- and respiratory glucose-limited chemostats. S.cerevisiae, CEN.PK-113-5D. 9x-Myc or TAP tags on C-terminal on each of the... -
A novel AST2 mutation generated upon whole-genome transformation of Saccharom...
The use of lignocellulosic biomass from waste streams or energy crops is highly favored over the use of fossil resources for the production of biofuels or bio-based chemicals in... -
RNA substrate length as an indicator of exosome interactions in vivo
The exosome complex plays key roles in RNA processing and degradation in Eukaryotes and Archaea. Outstanding structural studies have identified multiple pathways for RNA... -
Crosslinking and Analysis of cDNA (CRAC) of RNAs bound by Xrn1 and its tail d...
S.cerevisiae cells carrying either HTP tagged Xrn1 or its tail domain was UV crosslinked and tandemly purified and bound RNA was sent to next generation sequencing. This study... -
In vivo nucleosome occupancy in yeast (MNase-seq)
Open chromatin provides access to a wide spectrum of DNA binding proteins for DNA metabolism processes such as transcription, repair, recombination, and replication. In this... -
WGS of evolved S. cerevisiae strains with improved tolerance to lignocellulos...
Pretreated pinewood as a dedicated feedstock for bioethanol production is a promising but challenging substrate for fermentation. An industrial S. cerevisiae strain was... -
LTEE1 amplicon sequencing
targeted sequencing for LTEE1 population -
Structural variation detection
There are some tandem repeats in yeast genome. We artificially induced copy number variations and detected them by nanopore sequencing. -
Inactivation of the Budding Yeast Cohesin Loader Scc2 alters Gene Expression ...
Genome integrity is fundamental for cell survival and cell cycle progression. Important mechanisms for keeping the genome intact are proper sister chromatid segregation, correct... -
Saccharomyces cerevisiae Raw sequence reads
We demonstrate that nanodroplets are an effective cavitation enhancement agent for fragmentation of genomic DNA. Sonication of genomic DNA samples supplemented with nanodroplets... -
A hexasome is the preferred substrate for the INO80 chromatin remodeling comp...
The INO80 chromatin remodeling complex plays critical roles in transcription that are commonly attributed to INO80’s nucleosome sliding activity. Here we find that removal of... -
Saccharomyces cerevisiae YB210 GLBRCY127 transcriptome - LIMS402V2T14
RNAseq profiling of engineered S. cerevisiae during conversion of cellulosic sugars into biofuels Sample from Anaerobic bioreactor containing cellulosic media