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Ancient genomic regulatory blocks are a major source for gene deserts in vert...
4C-seq experiments to study the evolution of the chromatin architecture of ancient gene regulatory blocks at the origin of vertebrates. Overall design: 4C-seq experiments... -
A multi-kingdom genetic barcoding system for target clone isolation
High-throughput sequencing data of amplicon sequencing, barcode sequencing, and single-cell transcriptome assays. -
S. cerevisiae Transcriptome during co-cultivation
The growing interest of the winemaking industry on the use of non-Saccharomyces starters has prompted several studies about the physiological features of this diverse group of... -
Transcriptomic analysis of Notch3 null mice
Notch pathway is essential during development, however mice withNotch3 deletion are viable and fertile. The data herein represent the transcriptome of Notch3 deleted mice. -
G4access identifies G-quadruplexes and their associations with open chromatin...
Metazoan promoters are highly enriched in secondary structure forming motifs, among which G-quadruplexes (G4s). We describe G4access, a novel approach to isolate and sequence... -
Transcriptomic and lipidomic profiling of subcutaneous and visceral adipose t...
Transcriptomic and lipidomic profiling of subcutaneous and visceral adipose tissues in 15 vertebrates -
Genome Skimming with Nanopore Sequencing Precisely Determines Global and Tran...
This study determines that genome skimming, shallow depth of sequencing, is capable of accurately quantifying global DNA methylation level across a range of vertebrates. -
RNA vesicles content of fungi: Candida albicans strain ATCC Cryptococcus neof...
RNA vesicles content of fungi. -
Global view on the metabolism of RNA poly(A) tails in yeast Saccharomyces cer...
The polyadenosine tail (poly[A]-tail) is a universal modification of eukaryotic messenger RNAs (mRNAs) and non-coding RNAs (ncRNAs). In budding yeast, Pap1-synthesized mRNA... -
Transcriptomic analysis by Next Generation Sequencing of mouse bone marrow de...
Purpose: T. gondii is an obligate intracellular parasite that remodels host transcriptome during infection. How T. gondii provokes these changes is not fully understood. In the... -
Mus musculus Genome sequencing and assembly
Generate a mouse model through microinjection of PE3 plasmids to efficiently induce targeted single base deletion -
Poly(A)-tail profiling reveals an embryonic switch in translational control
Poly(A) tails enhance the stability and translation of most eukaryotic messenger RNAs, but difficulties in globally measuring poly(A)-tail lengths have impeded greater... -
Accessible chromatin landscapes of vertebrate embryogenesis
The relationship between development and evolution has attracted much attention and has been discussed as a central topic in the field of evolutionary biology because it could... -
Methanotroph activity and connectivity between two seep systems north off Sva...
This study investigates methane dynamics and microbial communities at two Arctic cold seep areas, Norskebanken and Hinlopen Trough, north of Svalbard. These seeps are connected... -
Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq
The identification of DNA G-quadruplexes (G4s) in the genome is important to study different biological processes in which these structures play a role, such as genome... -
Metabarcoding of Amazonia
Metabarcoding data of soil and liter collected in four localities across Brazilian Amazonia, using 16S ando 18S markers. -
Characterization of melanoma TILs and identification of mimotope peptide anti...
We sequenced TCRs of tumor-infiltrating T cells to characterize the T cell response following combination immunotherapy of murine melanoma. After identifying a dominant antigen... -
Raw sequence reads from Danish species
Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references. -
Crosstalk with astrocytes establishes tumor edge in glioblastoma
Clinical outcomes for patients with glioblastoma (GBM) are extremely poor due to inevitable tumor recurrence even after extensive treatments. These recurrences are thought to...