35 datasets found

Effect of bovine milk fat-based infant formulae on microbiota, metabolites and stool parameters in healthy term infants in a randomised, cross-over, placebo-controlled trial

lung microbiota of patients S.aureus infection and COVID-19

Microbial signatures for the early identification of pancreatic cancer

Sequencing of metagenomics samples from human tumors from immunosuppressed patients

Viral inactivation methods impact microbiome estimates.

16S V3V4 targeted sequencing of 109 samples from cirrhotics and controls. Biopsies, feces, peripheral and portal blood as samples.

The American Gut project is the largest crowdsourced citizen science project to date. Fecal, oral, skin, and other body site samples collected from thousands of participants...

The study describes a workflow to encourage the clinical utility and potential of next generation sequencing for the simultaneous detection of bacteria, fungi and antimicrobial...

Metagenomes, cultured reference genomes and metagenome assembled genomes Pure cultures

Mycobacterium strains received from other institutions, e.g. as part of a clinical test request.

we propose a novel approach, RiboFR-Seq (Ribosomal RNA gene Flanking Region Sequencing), for capturing both ribosomal RNA variable regions and their flanking protein-coding...

clinical metagenomics to the diagnosis of bone and joint infections

We have been developing a portable system for rapid bacterial composition determination for the diagnosis of infectious diseases using a nanopore technology-based sequencer,...

With its increasing importance as a human pathogen, the study of the <i>Aspergillus fumigatus</i> genome became a priority. Recent studies show that the frequency of...

The objective of this project was to assess if cell-free microbial DNA could be accurately detected and characterized from plasma of melanoma patients and healthy individuals by...