-
Assembly of a male Atlantic salmon using long reads
We sequenced a male Atlantic salmon using the PromethION instrument from Oxford Nanopore Technologies, and polished the assembly using Illumina reads. -
RAD-seq data was used to generate SNP candidates for the development of a SNP...
Selective breeding programs in aquaculture species have provided huge gains in a variety of commercially important traits. Many breeding designs require an explicit... -
Sequencing of Salmo salar
This sequence came from an Atlantic salmon sample purchased from a local grocery store. -
NutrEpi Work Package 3
Three groups of Atlantic salmon were fed with graded levels of micronutrient package. 27 liver samples were collected at post-smolt. The samples were processed by two... -
Global changes in the pituitary transcriptome during male puberty in salmon
Using sibling salmon males with low genetic variation and heterozygous for the puberty-associated vgll3 locus, expression differences (mRNA) that characterize pituitaries of... -
single nuclei RNAseq data from Atlantic salmon (Salmo salar) gill
An snRNAseq analysis of the Atlantic salmon gill to characterise its cellular complexity and development. Overall design: Atlantic salmon parr (>14cm) were raised on constant... -
Assembly of a female Atlantic salmon using long reads
We sequenced a female Atlantic salmon using the PromethION instrument from Oxford Nanopore Technologies, and polished the assembly using Illumina reads. -
ROS Work Package 3 - RNA-Seq muscle (raw, unaligned)
We investigated the effects of photoperiod and temperature on redox system of Atlantic salmon from March to August. 36Muscle samples were submitted -
A Genomic Perspective on an Old Question: Salmo trouts or Salmo trutta (Teleo...
Trouts of the Salmo trutta species-complex show high morphological and ecological diversity that, along with their very wide distribution, have led to morphological description... -
ROS Work Package 3 - RNA-Seq bone (raw, unaligned)
We investigated the effects of photoperiod and temperature on redox system of Atlantic salmon from March to August. 36 bone samples were submitted -
Response of the Atlantic salmon transcriptome to pancreas disease
This study aimed to gain a better understanding of the differences between salmon with high and low genomic breeding values (H-gEBV and L-gEBV respectively) for PD resistance -
Response of Atlantic salmon transcriptome to oxygen treatments
This study aimed to assess the effect of dissolved oxygen treatments (30%O2, 60%O2 and 100%O2) on gene expression during the early development of Atlantic salmon (alevin stage). -
Holofood Salmon 16S amplicon sequencing
Holofood Salmon 16S amplicon sequencing -
COMPARE Food Ring Trial - wet lab
Shotgun metagenome sequencing data generated from nucleic acids extracted from a spiked smoked salmon sample from the 2018 COMPARE Food Ring Trial - wet lab -
ROS Work Package 3 - RNA-Seq brain samples (raw, unaligned)
We investigated the effects of photoperiod and temperature on redox system of Atlantic salmon from March to August. 36 brain samples were submitted -
Genotype Environment interaction in Salmon
Genotype Environment interaction in Salmon -
Methylation of SRS infected Atlantic salmon (headkidney and liver)
RRBS data from 33 headkidney and 33 liver Atlantic salmon samples infected with Piscirickettsia salmonis (SRS) -
Skin samples of Atlantic salmon after single infection and co-infection with ...
Sea lice infestations and winter ulcer disease caused by Moritella viscosa are two major challenges for the Atlantic salmon (Salmo salar) aquaculture industry. Despite their... -
miRNA expression profiling in different tissues and early developmental stage...
miRNA expression study in Salmo salar to identify miRNAs that may be important in maintenance of tissue specific functions and in regulation of embryonic development -
Profiling the T cell receptor alpha/delta locus in Salmonids
Basal TCR alpha repertoire in healthy non-infected Atlantic salmon (salmo salar)