78 datasets found

We have developed a bladder-specific bacterial reference database consisting of 1134 genomes to aid in genomic, functional, and experimental analyses of the human bladder...

Microbial genes involved in the aromatic compound degradation deciphered through metagenomics analysis of industrial wastewater

The fever of patients after allogeneic hematopoietic stem cell transplantation (allo-HSCT) is complex, and it is still challenging to identify the cause of the fever. The immune...

The goal of this work was to develop an approach for the rapid and sensitive detection of microbial contaminants at low abundance from low volume of samples during the...

Whole genome sequencing of foodborne pathogens isolated from retail seafood as part of the US Food and Drug Administration surveillance project for NARMS

Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two...

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The Genome sequencing and assembly of Pseudomonas spp.

Public description: Technological advances over the past 20 years have led to the widespread use of molecular assays that aid the diagnosis of tuberculosis. The number of...

Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates

Advance the implementation of mNGS in pathogen diagnosis in clinics.

Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially...

Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and...

University of California at Davis 100K Pathogen Genome Project. Major bacterial pathogens in the United States and around the world, including Salmonella enterica, E. coli,...

This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre...

Whole genome sequencing of pure cultured microbial isolates of multiple species as part of the Food and Drug Administration surveillance effort of pathogens in medical products.

Integrated metabolome and microbiome reveal soil microbial dynamics, metabolic functions and and their correlation in a millennium paddy soil chronosequence

This BioProject hosts genome sequence data for the FDA GenomeTrakr's validation strain set, which includes 32 bacterial species of foodborne pathogens and common contaminants....

Wastewater has a predominant role for Public Health as source, reservoir and vehicle of antimicrobial resistance genes. This role is especially critical in developing countries...

42 blood samples and 22 peri-pancreatic specimens from 42 suspected infected pancreatic necrosis patients were collected to investigate the diagnostic performance of metagenomic...