174 datasets found

Plan de gestion des données de l'UMR INRAE BIOGECO Ce document explicite la manière dont sont obtenues, documentées, analysées, disséminées et archivées les données produites...

Three chestnut species (Castanea sativa, Castanea crenata and Castanea mollissima) and their hybrids have been massively planted worldwide for nut production. To better study...

This dataset provides the results of a systematic large-scale yeast two-hybrid screening of the Arabidopsis thaliana InterATOME library with effector proteins from two vascular...

Using cross-disciplinary approaches to characterize the plant core microbiome, we assessed the diversity and composition of leaf-associated fungal and viral communities from...

This Amplicon Sequence Variant (ASV) table was obtained by metabarcoding foliar fungal communities in conventional and organic vineyards. This table was generated after the...

Bioinformatic scripts used to sort, filter and analyze fungal raw sequence data obtained by metabarcoding foliar, bark and ground cover samples collected in an untreated...

1D 1H-NMR metabolomic profiling of xylem sap in two sunflower cultivars exposed to low Cd concentrations in hydroponics.

Propionibacterium freudenreichii CIRM-BIA 129 and CIRM-BIA 1025 osmoadaptation in chemically defined medium (MMO) and osmoadaptation in the presence of glycine betaine (GB) were...

Replication data for: "Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals": 100 simulated...

This dataset contains scripts and code that can be used to compare metabarcoding pipelines using a fungal mock community. These bioinformatics scripts were applied to the...

Manually curated reference annotation of Integrative Conjugative Elements (ICEs) and Integrative and Mobilizable Elements (IMEs) and other degenerated ICEs and IMEs in 40...

Grinder (v.0.5.3) (Angly, et al., 2012) was used to simulate the PCR amplification of fulllength (V3V4 and V4) sequences from reference databases. We generated 25 sets of...

Description of the data The data described here were produced from the ANR projects ADAPTOM (ANR-13-ADAP-0013) and TomEpiSet (ANR-16-CE20-0014). An 8-way tomato MAGIC...

Supplementary information containing figures, tables and tabulated data for "Milk metabolome reveals variations on enteric methane emissions from dairy cows fed a specific...

We present a new de-novo whole-genome assembly obtained from a high quality DNA extraction and long-reads sequencing Nanopore technology obtained from an isolate sampled in the...

Supplementary tables to manuscript in Chapter 3.

TBD

Data provide detailed information on the diversity of bacterial communities present on 576 samples of raw pork or poultry sausages produced industrially in 2017. Bacterial...

This dataset corresponds to the data and script used for a meta-analysis of genome-wide association studies in tomato for main flavor-related traits. They are based on...

This study aims at comparing the performance of two viral sequence enrichment approaches, double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) purification for...