34 datasets found

whole genome sequencing data 2017-2021

This is a diagnostic procedure based on NGS combined with probe capture enrichment which covering the entire MTB genome using plasma from children with active TB. The goal of...

RNA-Seq of modern Beijing and ancient Beijing strains

Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground...

The study compares whole genome sequencing with routine MT workflows for diagnosis of mycobacterium from positive liquid cultures in real-time. WGS prediction of mycobacterial...

Bacterial identification run in house at UCLA

We used mNGS to detect pathogens in matched transbronchial lung biopsy (TBLB), bronchoalveolar lavage fluid (BALF), and bronchial needle brushing (BB) specimens from 39 patients...

NGS analysis of CRISPR-assisted non-homologous end-joining genome editing in Mycobacterium tuberculosis is specific

Using targeted long-read-based next-generation sequencing (tNGS) to investigate the mycobacterial composition in DNA extracted from Mycobacterium bovis infected...

Public description: Technological advances over the past 20 years have led to the widespread use of molecular assays that aid the diagnosis of tuberculosis. The number of...

Establishing Drosophila as a powerful host model to study and identify novel mycobacterial virulence factors.

We analyzed the small RNA expression profile in cells infected by several distinct varieties of intracellular bacteria (Chlamydia, Legionella and Mycobacteria) and asked if...

Rapid detection of pathogens and antimicrobial resistance genes in ventilator-associated pneumonia in ICU by metagenomic nanopores sequencing

Identification of Mycobacteria species and detection of multi-drug resistant tuberculosis