-
Two weeks in the World 2020
The Two Weeks in the World research project has resulted in a dataset of 3100 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units... -
Various isolates of Bacteroides, Streptococcus, Clostridium, Klebsiella, Ente...
WGS sequencing of various bacterial isolates which were collected from mouse stool and clinical human colon samples. -
Rectal carriage of mcr in pregnant women and neonates in three Nigerian state...
Rectal carriage of mcr in pregnant women and neonates in three Nigerian state hospitals between 2015 and 2017. -
Isolated Wastewater Bacteria
Infections with antimicrobial resistant organisms are an important cause of morbidity and mortality worldwide and an ever-growing public health concern. The ability of tracking... -
Vibrio parahaemolyticus Genome sequencing and assembly
We isolated and sequenced five V. parahaemolyticus strains with different virulence level to identify the key virulent determinants that remarkably affected the pathogenicty. -
Antibacterial resistance in Lebanon
Sequences of Gram-negative pathogens of clinical samples in Lebanon and the MENA region -
CDC HAI-Seq Gram-negative bacteria
CDC Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Gram-negative bacteria -
Evaluating Nanopore-based bacterial variant calling
Benchmark various nanopore-based variant callers on 14 different species. Samples are sequenced on the latest (September 2023) R10.4.1 Nanopore flowcells and Illumina. Ground... -
Pakistan and United States ICU sink/water transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of MDROs contaminating hospital intensive care unit sinks and water sources... -
Gammaproteobacteria Raw sequence reads
A collection of Gammaproteobacteria isolated from environmental and patient sources originating from a single hospital in the United States -
Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support... -
Single laboratory evaluation of the (Q20+) nanopore sequencing kit for bacter...
This study aimed to evaluate the potential of Oxford Nanopore Technologies (ONT) GridION with R10.4.1 flow cells and associated library chemistry as a rapid and accurate method... -
Characterization of antimicrobial and antibiotic resistance in wastewater pri...
Metagenomic and genome sequences from samples collected from the primary effluent of wastewater around Baltimore, MD. -
Microbial community structure in the central Arctic Ocean
Bacterial and Archaeal community structure in the central Arctic Ocean -
ESKAPEE Pathogens from Foods
ESKAPEE pathogens isolated from foods. ESKAPEE is an acronym for Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas... -
Klebsiella pneumoniae Genome sequencing and assembly
Carbapenem-producing Klebsiella pneumoniae whole-genome sequencing -
Bacterial isolates from intensive care units
Whole genome sequencing of bacterial isolates over a 1-year period from a hospital's intensive care units. -
Gut microbiota in children with non-alcoholic fatty liver disease
Non-alcoholic fatty liver disease (NAFLD) is one of the most common causes of chronic liver disease in children worldwide. Gut microbiota and their metabolites may influence... -
BactID
Bacterial identification run in house at UCLA