36 datasets found

Metagenomes containing bacteria from positive blood culture broths in patients with sepsis

Whole genome sequencing of bacteria in clinical samples, mainly from the A Coruna University Hospital Complex (CHUAC, Galicia, Spain) and associated collections, under project...

Multi-drug resistant gram negative bacteria (also known as “Superbugs”) are causing infections in vulnerable patients in hospitals around the world. Much of the clinically...

Whole genome sequencing of cultured research organisms as part of the US Food and Drug Administration's WGS surveillance effort for the rapid traceback of foodborne pathogens.

Enterobacteriaceae strains isolated from newborns in a Chinese hospital

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support...

Prospective collection and sequencing of positive blood culture isolates in hospitalized adults in Cambodia

Carbapenem Resistant Enterobacteriaceae strains including Klebsiella, Escherichia, Enterobacter, Citrobacter and Pantoea species isolated from patients and hospital environment.

This project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam resistant...

The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden...

We have developed a bladder-specific bacterial reference database consisting of 1134 genomes to aid in genomic, functional, and experimental analyses of the human bladder...

http://www.sanger.ac.uk/resources/downloads/bacteria/ This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the...

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The Genome sequencing and assembly of Klebsiella spp.

Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and...

Whole-genome sequencing of bacterial isolates as part of WPHL's surveillance effort