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Stromal and Oncogenic Regulation of Colonic Stem Cells Revealed by Single-cel...
Poster presented at the 2022 UCL Cancer Domain Symposium. Awarded with the First Prize Runner-up. -
Sequence alignment programs
Very basic programs created in MATLAB to align either nucleotide or protein sequences. -
RNA seq - PDPN/CLEC-2 transcription in FRCs
Raw data to accompany figure 2 - Effects of CLEC-2 on ECM production by FRCsIncludes sample list in all format and and fastq files from RNAseq runs.Data set 28GBAbstractLymph... -
HEGP Challenge Dataset 1
Encrypted Dataset #1 for the HEGP Challenge, see https://github.com/encryption4genetics/HEGP-website for more details. Dataset comprises encrypted genotypes of 500 subjects at... -
Extracellular Matrix Remodelling during Lymph Node Expansion - #EMBOmesenchym...
Presentation from EMBO workshop - Mesenchymal cells in inflammation and Cancer - Athens May 2019 -
Persistent T Cell Repertoire Perturbation and T Cell Activation in HIV After ...
T cell receptor sequence data of 26 people living with HIV on long-term anti-retroviral therapy, and 12 HIV-negative healthy controls, produced using the UCL Chain lab protocol.... -
Changes in ESCRT-III filament geometry drive membrane remodelling and fission...
These are the data sets required to generate the figures in our paper 'Changes in ESCRT-III filament geometry drive membrane remodelling and fission in... -
Protein structures predicted using DMPfold2, plus training data
This dataset comprises predicted protein structures from the paper "Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized... -
Gap Analysis - spatial description of network spaces
MATLAB https://www.actonlab.co.uk/gap-analysis-matlab/ Instructions to carry out gap analysis on network images. Previously used in https://www.nature.com/articles/nature13814 -
Imputation and QTL Mapping in Multiparental Crop Populations from Low Coverag...
Posters describing the use of low-coverage sequence data to impute genotypes in multiparental populations of wheat and rice. The posters also show results from an integrated... -
HEGP Challenge Dataset 2
Encrypted Dataset #2 for the HEGP Challenge, see https://github.com/encryption4genetics/HEGP-website for more details. IMPORTANT UPDATE 09/10/2020Data have been replaced with... -
Proposed pathways and protein-protein interaction networks in age-related mac...
CellDesigner files describing pathogenesis pathways and Cytoscape files describing protein-protein interactions of potential relevance in age-related macular degeneration.By... -
The clonal structure and dynamics of the human T cell response to an organic ...
T cell receptor sequence data of alopecia patients before and during sensitisation with diphenylcyclopropenone and healthy volunteers at equivalent timepoints, using the UCL... -
CATH protein domain classification (version 4.2)
CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they... -
Novel computational approaches to study CRC tumour microenvironment organoids...
Poster for the 2021 CRUK Cancer Evolution Symposium. Colorectal cancer (CRC) tumours present as a heterocellular setting where the colon epithelia harbouring oncogenic...
