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cellX-predict code
cellX-predict software -
PCD Detect: Enhancing ciliary features though image averaging and classification
A package of programs to analyse ciliary cross sections to help detect primary ciliary dyskinesia defects. -
cellX-predict datasets
Machine learning dataset for cellx-predict -
Novel computational approaches to study CRC tumour microenvironment organoids...
Poster for the 2021 CRUK Cancer Evolution Symposium. Colorectal cancer (CRC) tumours present as a heterocellular setting where the colon epithelia harbouring oncogenic... -
CATH protein domain classification (version 4.2)
CATH is a classification of protein structures downloaded from the Protein Data Bank. We group protein domains into superfamilies when there is sufficient evidence they... -
The clonal structure and dynamics of the human T cell response to an organic ...
T cell receptor sequence data of alopecia patients before and during sensitisation with diphenylcyclopropenone and healthy volunteers at equivalent timepoints, using the UCL... -
Data and scripts for paper "Modelling Membrane Reshaping by Staged Polymeriza...
Data and scripts for paper "Modelling Membrane Reshaping by Staged Polymerization of ESCRT-III Filaments". Including data points for figures in main and SI, and LAMMPS input file. -
Proposed pathways and protein-protein interaction networks in age-related mac...
CellDesigner files describing pathogenesis pathways and Cytoscape files describing protein-protein interactions of potential relevance in age-related macular degeneration.By... -
TEM and ET datasets for: Validation of a stereological method for estimating ...
TEM images and ET z-stack (ET11) used for computing the size and density of cerebellar MFT vesicles and GC nuclei. ImageJ/Fiji particle outlines are included. -
HEGP Challenge Dataset 2
Encrypted Dataset #2 for the HEGP Challenge, see https://github.com/encryption4genetics/HEGP-website for more details. IMPORTANT UPDATE 09/10/2020Data have been replaced with... -
Cell tracking reference dataset
Raw microscopy images and associated data used for validation of cell tracking algorithms. -
Imputation and QTL Mapping in Multiparental Crop Populations from Low Coverag...
Posters describing the use of low-coverage sequence data to impute genotypes in multiparental populations of wheat and rice. The posters also show results from an integrated... -
Wild type transketolase dynamics
MD simulation of wild-type E.coli transketolase. Carried out in Gromacs by Haoran Yu. Published in Scientific Reports in 2017 Haoran Yu, Yihan Yan, Cheng Zhang, Paul A. Dalby... -
Gap Analysis - spatial description of network spaces
MATLAB https://www.actonlab.co.uk/gap-analysis-matlab/ Instructions to carry out gap analysis on network images. Previously used in https://www.nature.com/articles/nature13814 -
Example Software in R for Homomorphic Encryption
# HEGP.example.R # Author: Richard Mott, UCL Genetics Institute. # (C) 2019 Richard Mott # The function CFW.example() will download public data from Nicod et al 2016 Nature... -
Data for manuscript 'GMP compliant isolation of mucosal epithelial cells and ...
Data points for figure 1, 2, 3, 4 and 6. GraphPad Prism 8 files -
Protein structures predicted using DMPfold2, plus training data
This dataset comprises predicted protein structures from the paper "Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized... -
Changes in ESCRT-III filament geometry drive membrane remodelling and fission...
These are the data sets required to generate the figures in our paper 'Changes in ESCRT-III filament geometry drive membrane remodelling and fission in... -
Persistent T Cell Repertoire Perturbation and T Cell Activation in HIV After ...
T cell receptor sequence data of 26 people living with HIV on long-term anti-retroviral therapy, and 12 HIV-negative healthy controls, produced using the UCL Chain lab protocol.... -
Extracellular Matrix Remodelling during Lymph Node Expansion - #EMBOmesenchym...
Presentation from EMBO workshop - Mesenchymal cells in inflammation and Cancer - Athens May 2019