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Cancer bioMarkers database
The cancer bioMarkers database is curated and maintained by several clinical and scientific experts in the field of precision oncology supported by the European Union’s Horizon... -
OncoPaD
A tool aimed at the rational design of cancer gene panels. It estimates the cost-effectiveness of the designed panel on a cohort of tumors and provides reports on the importance... -
IntOGen - Pipeline
Analyses somatic mutations in thousands of tumor genomes to identify cancer driver genes. Requirements: IntOGen depends on Python 3.4 or above and some python libraries. If you... -
OncodriveFML
Method to identify genomic regions, both coding and non-coding, bearing mutations with significant shift towards high functional impact across a cohort of tumos (FMbias), which... -
iDGP
Database of human genes prioritized for their probability of involvement in dominant or recessive hereditary diseases. Content dom_rec_prediction.sql -> MySQL database... -
funcSTAR
Web tool for the selection of SNPs from the STAR project with potential functional effect. Més informació: funcSTAR (web) http://bg.upf.edu/funcSTAR/ Docker, 1.12+ Software:... -
OncodriveMUT
Bioinformatics method to identify individual driver mutations. INSTALL Create a new Anaconda python environment with all the required dependencies $ conda create -c bioconda -c... -
Intogen - Catalog of driver mutations
This database contains the results of the driver analysis performed by the Cancer Genome Interpreter across 6,792 exomes of a pan-cancer cohort of 28 tumor types. Validated... -
TCGI prescription
CGI drug prescription assigns targeted drugs to a tumor, based on its genomic alterations, according different levels of evidence (from pre-clinical assays to clinical... -
Gitools
Gitools is a framework for analysis and visualization of multidimensional genomic data using interactive heat-maps. Software: Java 7+ -
OncodriveRole
Machine-learning based approach to classify cancer driver genes into to Activating or Loss of Function roles for cancer gene development. -
OncodriveFM
OncodriveFM detects candidate cancer driver genes and pathways from catalogs of somatic mutations in a cohort of tumors by computing the bias towards the accumulation of... -
OncodriveCLUST
OncodriveCLUST is a method aimed to identify genes whose mutations are biased towards a large spatial clustering. This method is designed to exploit the feature that mutations... -
jHeatmap
Javascript library to create interactive heatmaps within webpages. jHeatmap is designed for incorporation into web portals and applications so it has the above listed extension... -
C10-HDAC7
HDAC7 is a repressor of myeloid genes whose downregulation in pre-B cells is required for transdifferentiation into macrophages. Software: Docker 1.12+ -
Oncodrive-CIS
Oncodrive-CIS is a method aimed to identify those copy number alterations (CNAs) leading to larger in cis expression changes that may be useful in elucidating the role of these... -
SVGMap
The aim of SVGMap is helping in the visualisation of experimental data which are associated with some graphical representation. Thus SVGMap browser allows to generate images... -
p27
The cyclin-cdk (cyclin-dependent kinase) inhibitor p27(Kip1) (p27) has a crucial negative role on cell cycle progression. In addition to its classical role as a cyclin-cdk... -
RBP2
Genome-wide analysis of the H3K4 histone demethylase RBP2 reveals a transcriptional program controlling differentiation. 1 WAR (Web application ARchive) file and 1 SQL... -
CGProp
Cancer gene properties. Content cgprop.war -> Java Website application (deploy in tomcat) cgprop.sql -> MySQL database Example Apache Proxy Pass configuration ProxyPass...
