RootPainter models and outputs for Mycale lingua within image data from the Lofoten Vesterålen Ocean Observatory (2017-19) and an ROV survey of the Tisler Reef (2021)

DOI

Five models were developed using RootPainter; four to detect and predict the surface area of the deep-sea sponge Mycale lingua and one to identify laser scales. Three of the sponge models were trained and applied to time-lapse images collected by the Lofoten Vesterålen Ocean Observatory. The fourth sponge model and laser model were developed and used on extracted video frames from an ROV survey of the Tisler reef. The total observatory dataset contained 18,346 images, consisting of 9,173 images each of the Mycale lingua sponges 'Magnus' and 'Mini' from 2017-2019. The total ROV video frame dataset contained 1,420 images from the East of the reef, captured in 2021.

Metrics.csv files - contain corrective annotation metrics from training Models 1-4Model results.zip - contain the output segmentations of Models 1-4, as well as the raw and processed (i.e. with artefacts removed and scaling performed) .csv files of extracted areasModel_1-4.pkl files - final RootPainter models used in the studyScript to crop Magnus and Mini - R script used to batch crop raw images from the Lofoten Vesterålen Ocean Observatory (https://loveocean.no/) to produce the datasets to train Models 1 and 1.1 (targeting sponge referred to as Magnus) and 2 (targeting sponge referred to as Mini).Tisler East frames 2021 - contains the cropped ROV video frames used to train Models 3 and 4

Identifier
DOI https://doi.org/10.1594/PANGAEA.966298
Related Identifier References https://doi.org/10.1101/2023.10.12.562046
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.966298
Provenance
Creator Clark, Hannah Poppy ORCID logo; Smith, Abraham G; McKay Fletcher, Daniel; Larsson, Ann I ORCID logo; Jaspars, Marcel; De Clippele, Laurence Helene (ORCID: 0000-0002-4097-274X)
Publisher PANGAEA
Publication Year 2024
Funding Reference Horizon 2020 https://doi.org/10.13039/501100007601 Crossref Funder ID 818123 https://doi.org/10.3030/818123 Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Novo Nordisk Foundation https://doi.org/10.13039/501100009708 Crossref Funder ID NNF22OC0080177 ; Rural and Environment Science and Analytical Services Division (RESAS) https://doi.org/10.13039/100011310 Crossref Funder ID SRUC-C5-1 ; UK Research and Innovation https://doi.org/10.13039/100014013 Crossref Funder ID BB/M010996/1 BBSRC EASTBIO DTP
Rights Creative Commons Attribution 4.0 International; Data access is restricted (moratorium, sensitive data, license constraints); https://creativecommons.org/licenses/by/4.0/
OpenAccess false
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 6 data points
Discipline Earth System Research
Spatial Coverage (10.960W, 58.997S, 15.386E, 68.908N); Lofoten/Vesterålen; Tisler Reef, Skagerrak
Temporal Coverage Begin 2017-01-01T00:00:00Z
Temporal Coverage End 2021-01-01T00:00:00Z