An RNA-seq time series of the medaka pituitary gland during sexual maturation

DOI

Directing both organismal homeostasis and physiological adaptation, the pituitary is a key endocrine gland in all vertebrates. One of its major tasks is to coordinate sexual maturation though the production and release of hormones stimulating gonad development. In order to study its developmental dynamics in the model fish medaka (Oryzias latipes), we sampled both the pituitary and the ovaries of 68 fish across the entire course of sexual maturation. We subsequently analyzed the pituitary glands using RNA-seq optimized for low input, revealing the time courses of production for individual peptide hormones.

STAR, 2.7.6a

Samtools, 1.10

htseq-count, 0.11.2

R, 4.0.3

edgeR, 3.32.0

cqn, 1.36.0

Identifier
DOI https://doi.org/10.18710/HTCXRN
Related Identifier https://doi.org/10.1038/s41597-023-01967-w
Metadata Access https://dataverse.no/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18710/HTCXRN
Provenance
Creator Ager-Wick, Eirill ORCID logo; Maugars, Gersende ORCID logo; Von Krogh, Kristine ORCID logo; Weltzien, Finn-Arne ORCID logo; Henkel, Christiaan ORCID logo
Publisher DataverseNO
Contributor Henkel, Christiaan; Norwegian University of Life Sciences; Ager-Wick, Eirill; Maugars, Gersende; Von Krogh, Kristine; Weltzien, Finn-Arne; NMBU Open Research Data
Publication Year 2022
Funding Reference Norwegian Research Council, 251307; Norwegian Research Council, 255601; Norwegian Research Council, 248828
Rights CC0 1.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/publicdomain/zero/1.0
OpenAccess true
Contact Henkel, Christiaan (Norwegian University of Life Sciences (NMBU))
Representation
Resource Type Experimental data; Dataset
Format text/plain; image/png
Size 15323; 30125; 6412; 6966477; 1880692; 2395155; 7994074; 6812601; 7342094; 7512045; 7008126; 7809519; 8398051; 7672263; 7881449; 6704662; 7706731; 6659911; 8013054; 7049426; 8151197; 7059555; 7277179; 8788785; 4903530; 7112921; 7370263; 7514453; 7407896; 7170596; 4891372; 5493330; 7192900; 6655120; 6866889; 7943251; 7268960; 7169723; 6266063; 8169737; 8703904; 8511769; 7361663; 8922176; 7900758; 8751186; 8935361; 9097231; 9184784; 9244986; 7131183; 7704086
Version 1.1
Discipline Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences; Medicine