GraphML file for homologues and reconstructed ancestors of arylsulfatases and phosphonate monoester hydrolases

DOI

Protein sequence network for homologues of arylsulfatases and phosphonate monoester hydrolases, including reconstructed ancestral sequences from a maximum-likelihood phylogenetic tree.

The GraphML attributes for the edges comprise the edge weights (pairwise sequence identity, "weight"). The GraphML attributes for the nodes comprise several annotations, if available: the annotated name ("Annotation"), the source organism ("Organism"), the accessions from the Protein Data Bank ("PDB"), an accession to public sequence databases such as the NCBI GenBank ("Accession"), an annotated name for the sequence ("Name"), and the group it belongs to ("Group"). Reconstructed ancestors are labelled by an integer as "Name" and "reconstructed ancestor" as "Annotation".

Identifier
DOI https://doi.org/10.18419/darus-817
Metadata Access https://darus.uni-stuttgart.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.18419/darus-817
Provenance
Creator Buchholz, Patrick C. F. ORCID logo
Publisher DaRUS
Contributor Pleiss, Jürgen
Publication Year 2021
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Pleiss, Jürgen (Universität Stuttgart)
Representation
Resource Type Dataset
Format text/xml-graphml
Size 2349789
Version 1.0
Discipline Life Sciences; Medicine