Bioinformatic and statistical scripts for "Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea, New Phytologist"

DOI

This dataset contains R-scripts to analyse the diversity and composition of seed fungal communities (Fort et al. 2020. Maternal effects shape seed fungal communities in Quercus petraea. New Phytologist, https://doi.org/10.1111/nph.17153). The bioinformatic script was applied to raw sequences after paired-end sequences were joined using PEAR v0.9.10 (Zhang et al., 2014). Raw sequences are available at https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551388. The metadata and ASV tables are provided so that the statistical analysis scripts can be applied without running the bioinformatic steps. Scripts used to fit HMSC models (Ovaskainen et al., 2017) are provided.

Identifier
DOI https://doi.org/10.15454/0CNFWS
Related Identifier https://doi.org/10.1111/nph.17153
Metadata Access https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.15454/0CNFWS
Provenance
Creator Fort, Tania; Pauvert, Charlie; Zanne, Amy; Ovaskainen, Otso; Caignard, Thomas; Barret, Matthieu; Compant, Stéphane; Hampe, Arndt; Delzon, Sylvain; Vacher, Corinne ORCID logo
Publisher Recherche Data Gouv
Contributor Vacher, Corinne
Publication Year 2020
Rights etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess true
Contact Vacher, Corinne (INRAE)
Representation
Resource Type Dataset
Format application/gzip; application/x-rlang-transport; text/csv; application/octet-stream; text/tab-separated-values; application/vnd.openxmlformats-officedocument.wordprocessingml.document
Size 2436; 10541; 1627483; 28187; 6295; 10729; 3686; 23478; 13776; 17839; 150981; 16062; 28081; 1474; 70820; 73051; 651018; 7809; 7842
Version 3.1
Discipline Agriculture, Forestry, Horticulture; Geosciences; Life Sciences; Plant Science; Biology; Omics; Microbial Ecology and Applied Microbiology; Silviculture; Ecology