Operational taxonomic units of deep-sea fishes from environmental DNA collected during Ramon Margalef cruise BIOMAN 2018 to the Bay of Biscay, with links to accession numbers


Analysis of fish environmental DNA (DNA traces released into the environment in form of tissue, mucus, feces, etc.) from several oceanic vertical profiles (from the surface up to 2000 m depth) along the continental slope of the Bay of Biscay. We provide the geographical location of each vertical profile, the station at which each sample belongs to, the depth, date, and hour at which each sample was collected, if the sampling was carried out during day or nighttime, and the water volume filtered. The accession numbers to the raw data of the sequenced samples (available on BioProject ID insdc:PRJNA759107) are also detailed. All samples were obtained by deploying a rosette sampler, and the surface ones were also collected using the continuous clean circuit intake of the vessel. The final operational taxonomic unit counts (OTUs) of the fish species were based on sequencing the mitochondrial 12S rRNA gene on an Illumina MiSeq platform, and taxonomic assignment to the World Register of Marine Species (WoRMS) and a local database restricted to fish species of the Northeast Atlantic and Mediterranean areas.

DOI https://doi.org/10.1594/PANGAEA.935870
Related Identifier https://doi.org/10.1002/lol2.10213
Related Identifier https://github.com/rodriguez-ezpeleta/deepFish_eDNA
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.935870
Creator Canals, Oriol; Mendibil, Iñaki; Santos Mocoroa, María; Irigoien, Xabier; Rodríguez-Ezpeleta, Naiara
Publisher PANGAEA - Data Publisher for Earth & Environmental Science
Publication Year 2021
Funding Reference European Commission, 817806; Ministerio de Ciencia e Innovación, CTM2017 89500 R
Rights Creative Commons Attribution 4.0 International; https://creativecommons.org/licenses/by/4.0/
OpenAccess true
Language English
Resource Type Dataset
Format text/tab-separated-values
Size 2726 data points
Discipline Biospheric Sciences; Ecology; Geosciences; Natural Sciences
Spatial Coverage (-6.430W, 43.600S, -2.170E, 47.350N); Bay of Biscay
Temporal Coverage Begin 2018-05-09T11:30:00Z
Temporal Coverage End 2018-05-24T17:10:00Z