Transcriptomic and histological analysis (Light and Transmission Electron Microscopy) on five Geodia species to identify their reproductive status and the gene expression during gametogenesis

DOI

The collected samples of Geodia species were used to identify if they were reproductive and understand which genes are expressed during gametogenesis. Specifically, specimens fixed in glutaraldehyde solution, were processed for histological analysis to observe gametes in the sponge tissue. Once, we identified male, female (while in gametogenesis) and non-reproductive specimens, we used the RNAlater fixed samples to extract RNA from those specimens. Then, we prepared cDNA libraries, sequenced them with illumina nextseq and we did differential gene expression analysis in order to compare the expressed genes in male vs female specimens and vs non-reproductive specimens. The goal was to understand the molecular machinery of gametogenesis in sponges from an evolutionary point of view.

Identifier
DOI https://doi.org/10.1594/PANGAEA.911273
Related Identifier https://doi.org/10.1093/molbev/msaa183
Metadata Access https://ws.pangaea.de/oai/provider?verb=GetRecord&metadataPrefix=datacite4&identifier=oai:pangaea.de:doi:10.1594/PANGAEA.911273
Provenance
Creator Koutsouveli, Vasiliki ORCID logo; Cárdenas, Paco ORCID logo; Rapp, Hans Tore; Riesgo, Ana ORCID logo
Publisher PANGAEA
Contributor Natural History Museum
Publication Year 2020
Funding Reference Horizon 2020 https://doi.org/10.13039/501100007601 Crossref Funder ID 679849 https://cordis.europa.eu/project/id/679849 Deep-sea Sponge Grounds Ecosystems of the North Atlantic
Rights Creative Commons Attribution 4.0 International; https://creativecommons.org/licenses/by/4.0/
OpenAccess true
Representation
Resource Type Dataset
Format text/tab-separated-values
Size 245 data points
Discipline Earth System Research
Spatial Coverage (5.374W, 58.876S, 21.375E, 73.983N); Schultz Bank; Sula reef; Tromsøflaket; Korsfjord; Kosterfjord
Temporal Coverage Begin 2016-04-05T00:00:00Z
Temporal Coverage End 2017-07-29T00:00:00Z