Generalized gametic relationships - a guide to practical implementation

DOI

The guide to practical application of generalized gametic relationships has three main parts. The first is the source code (Fortran2015) of a program for setting up the inverse of a generalized gametic relationship matrix from pedigree data, a detailed program description and example input and output files. In the second part six worked examples are presented, demonstrating in very detail how various mixed models with generalized gametic relationship matrices can be implemented using the ASReml package. Each example is accompanied by R-code to check model details and the correctness of the ASReml implementation. Finally a large mouse data set (about 13,000 observations on body weight, 153 generations) is provided together with details on how it can be analyzed with different gametic models using ASReml.

Identifier
DOI https://doi.org/10.22000/284
Metadata Access https://www.radar-service.eu/oai/OAIHandler?verb=GetRecord&metadataPrefix=datacite&identifier=10.22000/284
Provenance
Creator Reinsch, Norbert (Institut für Genetik und Biometrie, Leibniz-Institut für Nutztierbiologie (FBN)); Blunk, Inga (Institut für Genetik und Biometrie, Leibniz-Institut für Nutztierbiologie (FBN))
Publisher Leibniz Institute for Farm Animal Biology (FBN), Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany
Contributor RADAR
Publication Year 2021
Funding Reference Deutsche Forschungsgemeinschaft
OpenAccess true
Representation
Language English
Resource Type software for computing the inverse gametic relationship matrix (source code in Fortran2015) and worked small examples using R and the ASReml package). Large mouse data and pedigree with various example analyses.
Format application/zip
Discipline Various